Data underlying the publication: Histones and histone variant families in prokaryotes
doi:10.4121/d268a6a9-2fc5-46aa-a236-0ca3d3f7ed75.v2
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future.
For a link that will always point to the latest version, please use
doi: 10.4121/d268a6a9-2fc5-46aa-a236-0ca3d3f7ed75
doi: 10.4121/d268a6a9-2fc5-46aa-a236-0ca3d3f7ed75
Datacite citation style:
Schwab, Samuel; Hu, Yimin; van Erp, Bert; Cajili, Marc K. M.; Hartmann, Marcus D. et. al. (2024): Data underlying the publication: Histones and histone variant families in prokaryotes. Version 2. 4TU.ResearchData. dataset. https://doi.org/10.4121/d268a6a9-2fc5-46aa-a236-0ca3d3f7ed75.v2
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Dataset
choose version:
version 2 - 2024-08-12 (latest)
version 1 - 2024-07-16
The research objective was to make an overview of histones in prokaryotes and to categorize these histones. We have categorized these histones by predicting their monomeric and multimeric structures with AlphaFold2. Histones with similar predicted quaternary structures or with additional domains were categorized as one group. We provide functional insight into these histones from these predicted structures and by generating HMM profiles to find strongly conserved residues. The dataset contains the predicted structures shown in the article, the HMM profiles of all histone categories, and the list of prokaryotic histones.
history
- 2024-07-16 first online
- 2024-08-12 published, posted
publisher
4TU.ResearchData
format
zipped AlphaFold2 predictions, profiles, excel file, csv file
associated peer-reviewed publication
Histones and histone variant families in prokaryotes
organizations
Leiden Institute of Chemistry, Leiden University
DATA
files (56)
- 2,100 bytesMD5:
e854af87dfe56d2ae1eae603d444238b
README Figure 2.txt - 1,643 bytesMD5:
ee66e1c72b13734ee1b1c2f2f8deb5e9
README Figure 3.txt - 1,539 bytesMD5:
f4662768d073df49d4bdfb4753d27c4b
README Figure 4.txt - 1,052 bytesMD5:
6e3aa179b8381b7b52b69ab5ed3c52c2
README Figure 5a.txt - 1,037 bytesMD5:
93a5ce2b9f79a9065264d13961c01771
README Figure 5b.txt - 1,157 bytesMD5:
ec7d2e913b52f441f52e47112bd73e4a
README Figure 6a.txt - 1,006 bytesMD5:
a6c644c22773def429050f3088c39a28
README Figure 6b.txt - 1,055 bytesMD5:
29e0f4395a9b85ef91ba9e0999b7af11
README Figure 6c.txt - 953 bytesMD5:
7887110cd83dc0794a6b5a477c24917e
README Figure 7a.txt - 984 bytesMD5:
c01b5b23ac6f7779e4f3c65ea3b9e4d9
README Figure 7c.txt - 1,227 bytesMD5:
9e19f8e2eb74387376a2e540ad1c2067
README Supplementary Figure 10.txt - 932 bytesMD5:
4f4be6db8f49590dbad44d3b64bd4826
README Supplementary Figure 11a.txt - 1,007 bytesMD5:
cf587d7b9b3685e94c1152cf83c8e43b
README Supplementary Figure 14.txt - 1,231 bytesMD5:
e4ced63e8622e23138ad2a366a0f17ba
README Supplementary Figure 15.txt - 1,218 bytesMD5:
aab0dc82169824177a65732c4a222101
README Supplementary Figure 18.txt - 1,298 bytesMD5:
c35c0214d237efd3f5bbaaa7176802c5
README Supplementary Figure 20.txt - 1,221 bytesMD5:
6a195d7d7367653a20ad11945ed8322f
README Supplementary Figure 22.txt - 1,227 bytesMD5:
d6eae919f266ce753546416a1e18c8a0
README Supplementary Figure 24.txt - 1,639 bytesMD5:
7a30b6d70cf1672e676a2eced3938f98
README Supplementary Figure 25b.txt - 1,263 bytesMD5:
05673dd96e2e0d4b3188631f77725e93
README Supplementary Figure 26.txt - 1,006 bytesMD5:
0e0a2c77a2b9ab9edda8c26359def95f
README Supplementary Figure 30b.txt - 1,231 bytesMD5:
d39922761adbed9d7f6ed1eb28cb4889
README Supplementary Figure 32.txt - 1,219 bytesMD5:
4cc87bec63f8516d7bdc864b3a4bf77f
README Supplementary Figure 34.txt - 1,216 bytesMD5:
3f06e941c98152d69042a31cbcf7f206
README Supplementary Figure 35.txt - 1,071 bytesMD5:
c497ad9072432f2a549608e16379256f
README Supplementary Figure 5.txt - 1,360 bytesMD5:
f07666ae7322ae43d78a99179f1d8a72
README Supplementary Figure 6.txt - 977 bytesMD5:
92891c80a91952a6c989d154a2c99c4f
README Supplementary Figure 7a.txt - 1,225 bytesMD5:
a780fdce80052bcda885bc687d1ae9bc
README Supplementary Figure 9.txt - 248,103 bytesMD5:
a49a31a7481d3efe9280b5e4d71ceeac
Figure 2.xlsx - 2,024,990 bytesMD5:
e6053454416e774f863f445d40035530
Figure 3.zip - 2,822,684 bytesMD5:
72ac6e70be05ff78410b883afc11e089
Figure 4.zip - 6,073,811 bytesMD5:
c83035f010480560784e232248117a3a
Figure 5a.zip - 4,374,505 bytesMD5:
3e81138432692ef824882a62ac857398
Figure 5b.zip - 7,475 bytesMD5:
927ed9f889a81b44eb43124f64d4d16c
Figure 6a.tree - 3,441,831 bytesMD5:
75796d8f514a078862abfe9cfd164bec
Figure 6b.zip - 3,680,569 bytesMD5:
56effd1ed17ca0a2c73fb519ec91b1f3
Figure 6c.zip - 1,709,036 bytesMD5:
fb52407ebf70020d370ff88a0b630c3d
Figure 7a.zip - 2,177,012 bytesMD5:
874c1c3ac3d20e6c4353e4c17ca5fc98
Figure 7c.zip - 37,761 bytesMD5:
a62f51028e860934a25d8e5ae0e8a426
Supplementary Figure 10.hmm - 1,710,530 bytesMD5:
97fcebcc415553dad217ae9f367c6e77
Supplementary Figure 11a.zip - 836,371 bytesMD5:
91607e16398cb2612d043af974f9aa0b
Supplementary Figure 14.zip - 29,386 bytesMD5:
397d9f8edc52ea2d5ca25f1627b53ac2
Supplementary Figure 15.hmm - 77,733 bytesMD5:
a9dffde3e46936632124c72644122676
Supplementary Figure 18.hmm - 2,508,074 bytesMD5:
94d4995e54712c3054e2c1e0fe8bfe9a
Supplementary Figure 20.zip - 48,440 bytesMD5:
4c486450dbadf0f67a054eb2378d5437
Supplementary Figure 22.hmm - 61,459 bytesMD5:
a2a9ab0009e8152140e62f36a5895b12
Supplementary Figure 24.hmm - 5,432 bytesMD5:
15c2fe7a0c394e2f54700bf184c57eb6
Supplementary Figure 25b.csv - 5,131,320 bytesMD5:
5e898960fb27f598d9d392e97fb7e364
Supplementary Figure 26.zip - 9,486,109 bytesMD5:
15110d9005835b56e57eadef32258ce1
Supplementary Figure 30b.zip - 60,999 bytesMD5:
e602ab35f03956cef701968413465295
Supplementary Figure 32.hmm - 53,560 bytesMD5:
196a41bac24aeb3f6dafd99c7219d6f9
Supplementary Figure 34.hmm - 44,725 bytesMD5:
291b868cbf564d71d5f6c4c753295326
Supplementary Figure 35.hmm - 1,197,464 bytesMD5:
926f74ce132092f852b4a3dae380251f
Supplementary Figure 5.zip - 52,519 bytesMD5:
c04775577fe9b68d049fa9ea8b33c9d4
Supplementary Figure 6.tree - 1,809,888 bytesMD5:
cc5956903099ffe233c4a4a7fba2a468
Supplementary Figure 7a.zip - 30,776 bytesMD5:
4819f3340353a9ed930d175cc14ab402
Supplementary Figure 9.hmm -
download all files (zip)
49,776,656 bytes unzipped