
Data underlying the chapter introduction

Title: Data underlying the Introduction (Chapter 1) of the dissertation by Ewald Jongkind

Authors: Ewald P. J. Jongkind, Caroline E. Paul and U. Hanefeld

Short description: This dataset contains data prepared to introduce dissertation topic

Contact person: Caroline Paul, c.e.paul@tudelft.nl
Delft University of Technology – Faculty of Applied Sciences
Van der Maasweg 9 , 2629 HZ, Delft, The Netherlands

***Purpose of the test campaign***
The purpose of these experiments was to compare characterized IREDs and RedAms based on their sequences by a phylogenetic tree.
It is being made public to act as supplementary data for publications and for other researchers to use this data in their own work.
The data in this dataset was collected in the Biocatalysis Laboratory of the Delft University of Technology - Faculty of Applied Sciences, between September 2020 and September 2024.

***Description of the data in this data set***
A phylogenetic tree was prepared using characterized IREDs and RedAms from literature, and the enzymes discovered in this dissertation. Data was prepared using Mega11, the online tool iTOL( https://itol.embl.de/) and PowerPoint.
 
Documents:
Ch01E01 2024-06-24 combined ired redam sequences phylogenetic tree (analyzed with MEGA11)
Ch01E02 2024-07-30 active site alignment (analyzed with MEGA11)
Ch02E03 2024-07-24 phylogenetic tree after iTOL(edited figure in PowerPoint)