1. CK-VS-TSG
PathwayID | Pathway | Level1 | Level2 | list_number | total_number | Pvalue | FDR | Gene |
ko01053 | Biosynthesis of siderophore group nonribosomal peptides | Metabolism | Metabolism of terpenoids and polyketides | 6 | 14 | 0.00101912182318624 | 0.101912182318624 | gene-gene1903,gene-gene1902,gene-gene2108,gene-gene2105,gene-gene1904,gene-gene1901 |
ko00561 | Glycerolipid metabolism | Metabolism | Lipid metabolism | 12 | 55 | 0.00393305651798443 | 0.196652825899221 | gene-gene5012,gene-gene1601,gene-gene2736,gene-gene6732,gene-gene6231,gene-gene2734,gene-gene0395,gene-gene3009,gene-gene3008,gene-gene6321,gene-gene5024,gene-gene1130 |
ko00511 | Other glycan degradation | Metabolism | Glycan biosynthesis and metabolism | 2 | 2 | 0.0088684986167523 | 0.29561662055841 | gene-gene3747,gene-gene7313 |
ko00562 | Inositol phosphate metabolism | Metabolism | Carbohydrate metabolism | 5 | 18 | 0.0218710922221556 | 0.546777305553891 | gene-gene7381,gene-gene7387,gene-gene7380,gene-gene5354,gene-gene7383 |
ko03450 | Non-homologous end-joining | Genetic Information Processing | Replication and repair | 2 | 4 | 0.0468206320168369 | 0.917238087674424 | gene-gene7346,gene-gene2040 |
ko00572 | Arabinogalactan biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 6 | 32 | 0.0740344534430087 | 0.917238087674424 | gene-gene2736,gene-gene5012,gene-gene0395,gene-gene6321,gene-gene5024,gene-gene2734 |
ko00571 | Lipoarabinomannan (LAM) biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 4 | 18 | 0.0821716953462703 | 0.917238087674424 | gene-gene4081,gene-gene0018,gene-gene5016,gene-gene5025 |
ko00250 | Alanine, aspartate and glutamate metabolism | Metabolism | Amino acid metabolism | 7 | 41 | 0.0847287375886585 | 0.917238087674424 | gene-gene5839,gene-gene5312,gene-gene5986,gene-gene2894,gene-gene0725,gene-gene0724,gene-gene4100 |
ko00624 | Polycyclic aromatic hydrocarbon degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 1 | 0.0944584382871536 | 0.917238087674424 | gene-gene6054 |
ko00121 | Secondary bile acid biosynthesis | Metabolism | Lipid metabolism | 1 | 1 | 0.0944584382871536 | 0.917238087674424 | gene-gene2461 |
ko00061 | Fatty acid biosynthesis | Metabolism | Lipid metabolism | 8 | 51 | 0.100896189644187 | 0.917238087674424 | gene-gene3513,gene-gene6249,gene-gene7337,gene-gene7591,gene-gene3627,gene-gene1258,gene-gene5226,gene-gene5229 |
ko00280 | Valine, leucine and isoleucine degradation | Metabolism | Amino acid metabolism | 11 | 78 | 0.110288563106853 | 0.919071359223773 | gene-gene3628,gene-gene1601,gene-gene6069,gene-gene3626,gene-gene3627,gene-gene7372,gene-gene3485,gene-gene5354,gene-gene5226,gene-gene6430,gene-gene3631 |
ko00791 | Atrazine degradation | Metabolism | Xenobiotics biodegradation and metabolism | 2 | 7 | 0.135795211475399 | 0.964283287966702 | gene-gene2039,gene-gene3659 |
ko00333 | Prodigiosin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 3 | 14 | 0.138992574809426 | 0.964283287966702 | gene-gene5229,gene-gene7337,gene-gene3513 |
ko00900 | Terpenoid backbone biosynthesis | Metabolism | Metabolism of terpenoids and polyketides | 5 | 31 | 0.161854919558714 | 0.964283287966702 | gene-gene3410,gene-gene7785,gene-gene7372,gene-gene3409,gene-gene6664 |
ko00430 | Taurine and hypotaurine metabolism | Metabolism | Metabolism of other amino acids | 2 | 8 | 0.170250714032373 | 0.964283287966702 | gene-gene6037,gene-gene5312 |
ko00232 | Caffeine metabolism | Metabolism | Biosynthesis of other secondary metabolites | 1 | 2 | 0.180048377957555 | 0.964283287966702 | gene-gene1135 |
ko00340 | Histidine metabolism | Metabolism | Amino acid metabolism | 4 | 24 | 0.18498139624564 | 0.964283287966702 | gene-gene5035,gene-gene5032,gene-gene1601,gene-gene5031 |
ko00770 | Pantothenate and CoA biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 4 | 24 | 0.18498139624564 | 0.964283287966702 | gene-gene1601,gene-gene3130,gene-gene7371,gene-gene6730 |
ko00030 | Pentose phosphate pathway | Metabolism | Carbohydrate metabolism | 4 | 25 | 0.205094809319185 | 0.964283287966702 | gene-gene7598,gene-gene0115,gene-gene6729,gene-gene4902 |
ko02060 | Phosphotransferase system (PTS) | Environmental Information Processing | Membrane transport | 2 | 9 | 0.205939885577825 | 0.964283287966702 | gene-gene3010,gene-gene3954 |
ko00630 | Glyoxylate and dicarboxylate metabolism | Metabolism | Carbohydrate metabolism | 8 | 63 | 0.238590535805585 | 0.964283287966702 | gene-gene3627,gene-gene1133,gene-gene2068,gene-gene7372,gene-gene5226,gene-gene1130,gene-gene1132,gene-gene1131 |
ko00524 | Neomycin, kanamycin and gentamicin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 3 | 0.257597396435718 | 0.964283287966702 | gene-gene2311 |
ko00640 | Propanoate metabolism | Metabolism | Carbohydrate metabolism | 6 | 46 | 0.263195237735738 | 0.964283287966702 | gene-gene5354,gene-gene5226,gene-gene3627,gene-gene3485,gene-gene6069,gene-gene3083 |
ko00903 | Limonene and pinene degradation | Metabolism | Metabolism of terpenoids and polyketides | 4 | 28 | 0.268704929240654 | 0.964283287966702 | gene-gene3485,gene-gene1601,gene-gene5026,gene-gene7451 |
ko05152 | Tuberculosis | Human Diseases | Infectious disease: bacterial | 2 | 11 | 0.27896501248774 | 0.964283287966702 | gene-gene5405,gene-gene3302 |
ko00290 | Valine, leucine and isoleucine biosynthesis | Metabolism | Amino acid metabolism | 3 | 20 | 0.291228161371871 | 0.964283287966702 | gene-gene3130,gene-gene7371,gene-gene5839 |
ko00010 | Glycolysis / Gluconeogenesis | Metabolism | Carbohydrate metabolism | 6 | 49 | 0.314393524246643 | 0.964283287966702 | gene-gene1601,gene-gene1269,gene-gene1553,gene-gene2311,gene-gene7598,gene-gene1551 |
ko01040 | Biosynthesis of unsaturated fatty acids | Metabolism | Lipid metabolism | 3 | 21 | 0.318228947264444 | 0.964283287966702 | gene-gene1258,gene-gene7591,gene-gene6249 |
ko00620 | Pyruvate metabolism | Metabolism | Carbohydrate metabolism | 8 | 69 | 0.324098876324029 | 0.964283287966702 | gene-gene5226,gene-gene7372,gene-gene5715,gene-gene3627,gene-gene1551,gene-gene1553,gene-gene1269,gene-gene1601 |
ko00053 | Ascorbate and aldarate metabolism | Metabolism | Carbohydrate metabolism | 1 | 4 | 0.327856317908679 | 0.964283287966702 | gene-gene1601 |
ko00364 | Fluorobenzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 4 | 0.327856317908679 | 0.964283287966702 | gene-gene2004 |
ko00626 | Naphthalene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 4 | 0.327856317908679 | 0.964283287966702 | gene-gene6054 |
ko00623 | Toluene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 4 | 0.327856317908679 | 0.964283287966702 | gene-gene2004 |
ko00460 | Cyanoamino acid metabolism | Metabolism | Metabolism of other amino acids | 2 | 13 | 0.351582935879425 | 0.981444850527693 | gene-gene0724,gene-gene6037 |
ko00480 | Glutathione metabolism | Metabolism | Metabolism of other amino acids | 2 | 14 | 0.387014662724425 | 0.981444850527693 | gene-gene6037,gene-gene7398 |
ko01503 | Cationic antimicrobial peptide (CAMP) resistance | Human Diseases | Drug resistance: antimicrobial | 1 | 5 | 0.39150628780369 | 0.981444850527693 | gene-gene5084 |
ko00052 | Galactose metabolism | Metabolism | Carbohydrate metabolism | 2 | 15 | 0.421584059397945 | 0.981444850527693 | gene-gene2311,gene-gene7598 |
ko00520 | Amino sugar and nucleotide sugar metabolism | Metabolism | Carbohydrate metabolism | 4 | 35 | 0.424809561119598 | 0.981444850527693 | gene-gene2894,gene-gene3747,gene-gene2311,gene-gene4578 |
ko00930 | Caprolactam degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 25 | 0.425415668357636 | 0.981444850527693 | gene-gene7451,gene-gene3485,gene-gene5026 |
ko00621 | Dioxin degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 6 | 0.449165199256278 | 0.981444850527693 | gene-gene6054 |
ko00401 | Novobiocin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 6 | 0.449165199256278 | 0.981444850527693 | gene-gene2656 |
ko00220 | Arginine biosynthesis | Metabolism | Amino acid metabolism | 3 | 26 | 0.45145041227806 | 0.981444850527693 | gene-gene3659,gene-gene5839,gene-gene3802 |
ko00051 | Fructose and mannose metabolism | Metabolism | Carbohydrate metabolism | 3 | 26 | 0.45145041227806 | 0.981444850527693 | gene-gene7598,gene-gene0341,gene-gene4578 |
ko00360 | Phenylalanine metabolism | Metabolism | Amino acid metabolism | 5 | 48 | 0.480666330094577 | 0.981444850527693 | gene-gene4735,gene-gene1653,gene-gene6254,gene-gene3485,gene-gene6353 |
ko00523 | Polyketide sugar unit biosynthesis | Metabolism | Metabolism of terpenoids and polyketides | 1 | 7 | 0.501393530553091 | 0.981444850527693 | gene-gene0019 |
ko00361 | Chlorocyclohexane and chlorobenzene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 7 | 0.501393530553091 | 0.981444850527693 | gene-gene2004 |
ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | Metabolism | Amino acid metabolism | 3 | 28 | 0.501995865128707 | 0.981444850527693 | gene-gene2656,gene-gene1653,gene-gene2100 |
ko00984 | Steroid degradation | Metabolism | Xenobiotics biodegradation and metabolism | 4 | 39 | 0.511203043181737 | 0.981444850527693 | gene-gene6223,gene-gene1390,gene-gene4857,gene-gene7244 |
ko00410 | beta-Alanine metabolism | Metabolism | Metabolism of other amino acids | 3 | 29 | 0.526377528768487 | 0.981444850527693 | gene-gene1601,gene-gene3485,gene-gene5354 |
ko00710 | Carbon fixation in photosynthetic organisms | Metabolism | Energy metabolism | 2 | 19 | 0.548684303612403 | 0.981444850527693 | gene-gene5715,gene-gene6729 |
ko00380 | Tryptophan metabolism | Metabolism | Amino acid metabolism | 5 | 52 | 0.554572991530227 | 0.981444850527693 | gene-gene1601,gene-gene6353,gene-gene6254,gene-gene3485,gene-gene7372 |
ko00230 | Purine metabolism | Metabolism | Nucleotide metabolism | 7 | 75 | 0.574469740857492 | 0.981444850527693 | gene-gene5098,gene-gene3884,gene-gene5986,gene-gene1135,gene-gene1136,gene-gene3771,gene-gene1137 |
ko00350 | Tyrosine metabolism | Metabolism | Amino acid metabolism | 2 | 20 | 0.577290541639129 | 0.981444850527693 | gene-gene6254,gene-gene2661 |
ko00625 | Chloroalkane and chloroalkene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 9 | 0.591544617401543 | 0.981444850527693 | gene-gene1601 |
ko00920 | Sulfur metabolism | Metabolism | Energy metabolism | 3 | 32 | 0.595390243556737 | 0.981444850527693 | gene-gene4681,gene-gene5098,gene-gene5102 |
ko00330 | Arginine and proline metabolism | Metabolism | Amino acid metabolism | 3 | 32 | 0.595390243556737 | 0.981444850527693 | gene-gene1601,gene-gene4100,gene-gene6353 |
ko00860 | Porphyrin metabolism | Metabolism | Metabolism of cofactors and vitamins | 4 | 45 | 0.628447703386382 | 0.981444850527693 | gene-gene6233,gene-gene6251,gene-gene3344,gene-gene6199 |
ko02020 | Two-component system | Environmental Information Processing | Signal transduction | 7 | 81 | 0.65876556593006 | 0.981444850527693 | gene-gene5300,gene-gene0788,gene-gene7372,gene-gene7310,gene-gene3630,gene-gene2054,gene-gene5299 |
ko00261 | Monobactam biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 11 | 0.665484742635637 | 0.981444850527693 | gene-gene5098 |
ko00660 | C5-Branched dibasic acid metabolism | Metabolism | Carbohydrate metabolism | 1 | 11 | 0.665484742635637 | 0.981444850527693 | gene-gene3130 |
ko01059 | Biosynthesis of enediyne antibiotics | Metabolism | Metabolism of terpenoids and polyketides | 1 | 11 | 0.665484742635637 | 0.981444850527693 | gene-gene3329 |
ko00643 | Styrene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 12 | 0.697302934521912 | 0.981444850527693 | gene-gene6353 |
ko02025 | Biofilm formation | Cellular Processes | Cellular community - prokaryotes | 1 | 12 | 0.697302934521912 | 0.981444850527693 | gene-gene3884 |
ko03440 | Homologous recombination | Genetic Information Processing | Replication and repair | 2 | 25 | 0.700363673409145 | 0.981444850527693 | gene-gene7509,gene-gene7508 |
ko00790 | Folate biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 2 | 25 | 0.700363673409145 | 0.981444850527693 | gene-gene1653,gene-gene2150 |
ko00780 | Biotin metabolism | Metabolism | Metabolism of cofactors and vitamins | 2 | 25 | 0.700363673409145 | 0.981444850527693 | gene-gene7337,gene-gene3513 |
ko03420 | Nucleotide excision repair | Genetic Information Processing | Replication and repair | 1 | 13 | 0.726112934408786 | 0.981444850527693 | gene-gene4603 |
ko00450 | Selenocompound metabolism | Metabolism | Metabolism of other amino acids | 1 | 13 | 0.726112934408786 | 0.981444850527693 | gene-gene5098 |
ko00740 | Riboflavin metabolism | Metabolism | Metabolism of cofactors and vitamins | 1 | 13 | 0.726112934408786 | 0.981444850527693 | gene-gene2150 |
ko00020 | Citrate cycle (TCA cycle) | Metabolism | Carbohydrate metabolism | 3 | 40 | 0.745518792681598 | 0.981444850527693 | gene-gene2068,gene-gene1551,gene-gene1553 |
ko00670 | One carbon pool by folate | Metabolism | Metabolism of cofactors and vitamins | 1 | 14 | 0.752197416846044 | 0.981444850527693 | gene-gene1906 |
ko00521 | Streptomycin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 14 | 0.752197416846044 | 0.981444850527693 | gene-gene2311 |
ko00470 | D-Amino acid metabolism | Metabolism | Metabolism of other amino acids | 1 | 14 | 0.752197416846044 | 0.981444850527693 | gene-gene7366 |
ko00910 | Nitrogen metabolism | Metabolism | Energy metabolism | 2 | 28 | 0.758991779169627 | 0.981444850527693 | gene-gene1955,gene-gene7310 |
ko00680 | Methane metabolism | Metabolism | Energy metabolism | 2 | 28 | 0.758991779169627 | 0.981444850527693 | gene-gene7598,gene-gene5715 |
ko03018 | RNA degradation | Genetic Information Processing | Folding, sorting and degradation | 1 | 15 | 0.775812656663765 | 0.981444850527693 | gene-gene5405 |
ko00627 | Aminobenzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 2 | 29 | 0.776222464384526 | 0.981444850527693 | gene-gene3485,gene-gene6353 |
ko00071 | Fatty acid degradation | Metabolism | Lipid metabolism | 5 | 68 | 0.787355610055606 | 0.981444850527693 | gene-gene6430,gene-gene7372,gene-gene3485,gene-gene4735,gene-gene1601 |
ko03070 | Bacterial secretion system | Environmental Information Processing | Membrane transport | 1 | 16 | 0.797190979295956 | 0.981444850527693 | gene-gene5037 |
ko00130 | Ubiquinone and other terpenoid-quinone biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 1 | 16 | 0.797190979295956 | 0.981444850527693 | gene-gene2220 |
ko00500 | Starch and sucrose metabolism | Metabolism | Carbohydrate metabolism | 2 | 31 | 0.807495977143352 | 0.981444850527693 | gene-gene2311,gene-gene6241 |
ko00310 | Lysine degradation | Metabolism | Amino acid metabolism | 3 | 45 | 0.814599225937985 | 0.981444850527693 | gene-gene3485,gene-gene7372,gene-gene1601 |
ko02024 | Quorum sensing | Cellular Processes | Cellular community - prokaryotes | 4 | 59 | 0.82543748851408 | 0.982663676802476 | gene-gene5037,gene-gene2150,gene-gene4417,gene-gene2100 |
ko00541 | O-Antigen nucleotide sugar biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 1 | 19 | 0.849913749679066 | 0.988271801952403 | gene-gene4578 |
ko03060 | Protein export | Genetic Information Processing | Folding, sorting and degradation | 1 | 19 | 0.849913749679066 | 0.988271801952403 | gene-gene5037 |
ko03430 | Mismatch repair | Genetic Information Processing | Replication and repair | 1 | 21 | 0.877247447397088 | 0.998626081473745 | gene-gene4603 |
ko00564 | Glycerophospholipid metabolism | Metabolism | Lipid metabolism | 1 | 22 | 0.888997851283774 | 0.998626081473745 | gene-gene4796 |
ko00550 | Peptidoglycan biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 1 | 23 | 0.89963024100755 | 0.998626081473745 | gene-gene6718 |
ko00650 | Butanoate metabolism | Metabolism | Carbohydrate metabolism | 4 | 68 | 0.89966519458536 | 0.998626081473745 | gene-gene3130,gene-gene7372,gene-gene3485,gene-gene3631 |
ko00362 | Benzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 56 | 0.912755437481825 | 0.998626081473745 | gene-gene0401,gene-gene3485,gene-gene7372 |
ko00281 | Geraniol degradation | Metabolism | Metabolism of terpenoids and polyketides | 1 | 26 | 0.925827857524055 | 0.998626081473745 | gene-gene3485 |
ko03010 | Ribosome | Genetic Information Processing | Translation | 3 | 60 | 0.934740124803916 | 0.998626081473745 | gene-gene1925,gene-gene1885,gene-gene2186 |
ko00970 | Aminoacyl-tRNA biosynthesis | Genetic Information Processing | Translation | 1 | 31 | 0.955258226447316 | 0.998626081473745 | gene-gene1906 |
ko00240 | Pyrimidine metabolism | Metabolism | Nucleotide metabolism | 1 | 32 | 0.95956860925586 | 0.998626081473745 | gene-gene5033 |
ko00720 | Carbon fixation pathways in prokaryotes | Metabolism | Energy metabolism | 2 | 53 | 0.968062938534486 | 0.998626081473745 | gene-gene5715,gene-gene7372 |
ko00270 | Cysteine and methionine metabolism | Metabolism | Amino acid metabolism | 1 | 39 | 0.980142634961978 | 0.998626081473745 | gene-gene7366 |
ko02010 | ABC transporters | Environmental Information Processing | Membrane transport | 6 | 125 | 0.984738350138896 | 0.998626081473745 | gene-gene7303,gene-gene7544,gene-gene7297,gene-gene7300,gene-gene2388,gene-gene7302 |
ko00260 | Glycine, serine and threonine metabolism | Metabolism | Amino acid metabolism | 1 | 45 | 0.989233678261356 | 0.998626081473745 | gene-gene1130 |
ko00190 | Oxidative phosphorylation | Metabolism | Energy metabolism | 1 | 65 | 0.998626081473745 | 0.998626081473745 | gene-gene3119 |