1. CK-VS-TSG
PathwayID | Pathway | Level1 | Level2 | Up_number | Down_number | DEG_number | total_number | Pvalue | FDR | Up_gene | Down_gene |
ko00030 | Pentose phosphate pathway | Metabolism | Carbohydrate metabolism | 6 | 4 | 10 | 25 | 0.0133649024519272 | 0.423930423621797 | gene-gene3864,gene-gene5302,gene-gene3271,gene-gene4738,gene-gene1095,gene-gene6100 | gene-gene4902,gene-gene6729,gene-gene7598,gene-gene0115 |
ko00280 | Valine, leucine and isoleucine degradation | Metabolism | Amino acid metabolism | 12 | 11 | 23 | 78 | 0.0185088033325802 | 0.423930423621797 | gene-gene0528,gene-gene1474,gene-gene3318,gene-gene6399,gene-gene0624,gene-gene3316,gene-gene7644,gene-gene2510,gene-gene5618,gene-gene6400,gene-gene0981,gene-gene3404 | gene-gene3628,gene-gene3627,gene-gene6430,gene-gene3485,gene-gene3626,gene-gene3631,gene-gene5226,gene-gene1601,gene-gene6069,gene-gene7372,gene-gene5354 |
ko00630 | Glyoxylate and dicarboxylate metabolism | Metabolism | Carbohydrate metabolism | 11 | 8 | 19 | 63 | 0.0246281481833744 | 0.423930423621797 | gene-gene2350,gene-gene0624,gene-gene3318,gene-gene1474,gene-gene7146,gene-gene6399,gene-gene6983,gene-gene0530,gene-gene2337,gene-gene6400,gene-gene3139 | gene-gene5226,gene-gene1132,gene-gene2068,gene-gene3627,gene-gene1133,gene-gene7372,gene-gene1130,gene-gene1131 |
ko00340 | Histidine metabolism | Metabolism | Amino acid metabolism | 5 | 4 | 9 | 24 | 0.0291356281235256 | 0.423930423621797 | gene-gene0266,gene-gene0262,gene-gene0267,gene-gene7007,gene-gene4618 | gene-gene5032,gene-gene5035,gene-gene1601,gene-gene5031 |
ko00770 | Pantothenate and CoA biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 5 | 4 | 9 | 24 | 0.0291356281235256 | 0.423930423621797 | gene-gene0899,gene-gene0528,gene-gene4018,gene-gene0903,gene-gene0901 | gene-gene6730,gene-gene7371,gene-gene1601,gene-gene3130 |
ko00020 | Citrate cycle (TCA cycle) | Metabolism | Carbohydrate metabolism | 10 | 3 | 13 | 40 | 0.0327635287109486 | 0.423930423621797 | gene-gene0626,gene-gene0625,gene-gene0627,gene-gene0811,gene-gene5332,gene-gene1640,gene-gene0624,gene-gene7042,gene-gene1693,gene-gene1639 | gene-gene1551,gene-gene1553,gene-gene2068 |
ko00511 | Other glycan degradation | Metabolism | Glycan biosynthesis and metabolism | 0 | 2 | 2 | 2 | 0.0375198995617732 | 0.423930423621797 | - | gene-gene7313,gene-gene3747 |
ko05130 | Pathogenic Escherichia coli infection | Human Diseases | Infectious disease: bacterial | 2 | 0 | 2 | 2 | 0.0375198995617732 | 0.423930423621797 | gene-gene6049,gene-gene5285 | - |
ko01053 | Biosynthesis of siderophore group nonribosomal peptides | Metabolism | Metabolism of terpenoids and polyketides | 0 | 6 | 6 | 14 | 0.0375798179934517 | 0.423930423621797 | - | gene-gene1902,gene-gene2108,gene-gene2105,gene-gene1903,gene-gene1904,gene-gene1901 |
ko00010 | Glycolysis / Gluconeogenesis | Metabolism | Carbohydrate metabolism | 9 | 6 | 15 | 49 | 0.0383941089446836 | 0.423930423621797 | gene-gene0624,gene-gene0243,gene-gene1095,gene-gene5285,gene-gene0627,gene-gene6049,gene-gene3271,gene-gene0626,gene-gene0625 | gene-gene7598,gene-gene1553,gene-gene1601,gene-gene1269,gene-gene1551,gene-gene2311 |
ko00250 | Alanine, aspartate and glutamate metabolism | Metabolism | Amino acid metabolism | 6 | 7 | 13 | 41 | 0.039856706494357 | 0.423930423621797 | gene-gene0068,gene-gene0512,gene-gene7065,gene-gene5559,gene-gene6983,gene-gene2509 | gene-gene5312,gene-gene0725,gene-gene2894,gene-gene5986,gene-gene5839,gene-gene4100,gene-gene0724 |
ko00710 | Carbon fixation in photosynthetic organisms | Metabolism | Energy metabolism | 5 | 2 | 7 | 19 | 0.0575241305856197 | 0.560860273209792 | gene-gene6100,gene-gene5285,gene-gene4738,gene-gene6049,gene-gene3271 | gene-gene6729,gene-gene5715 |
ko00290 | Valine, leucine and isoleucine biosynthesis | Metabolism | Amino acid metabolism | 4 | 3 | 7 | 20 | 0.0743454387195826 | 0.666859361220476 | gene-gene0901,gene-gene0528,gene-gene0899,gene-gene0903 | gene-gene3130,gene-gene7371,gene-gene5839 |
ko00460 | Cyanoamino acid metabolism | Metabolism | Metabolism of other amino acids | 3 | 2 | 5 | 13 | 0.0881461625521276 | 0.666859361220476 | gene-gene6470,gene-gene1787,gene-gene5559 | gene-gene0724,gene-gene6037 |
ko01040 | Biosynthesis of unsaturated fatty acids | Metabolism | Lipid metabolism | 4 | 3 | 7 | 21 | 0.0937628926242213 | 0.666859361220476 | gene-gene1038,gene-gene4662,gene-gene4303,gene-gene1169 | gene-gene1258,gene-gene7591,gene-gene6249 |
ko00561 | Glycerolipid metabolism | Metabolism | Lipid metabolism | 3 | 12 | 15 | 55 | 0.0950207521255363 | 0.666859361220476 | gene-gene3139,gene-gene4309,gene-gene5778 | gene-gene6732,gene-gene1601,gene-gene3008,gene-gene1130,gene-gene6321,gene-gene6231,gene-gene2736,gene-gene5024,gene-gene3009,gene-gene2734,gene-gene5012,gene-gene0395 |
ko00590 | Arachidonic acid metabolism | Metabolism | Lipid metabolism | 2 | 0 | 2 | 3 | 0.0980816542138157 | 0.666859361220476 | gene-gene5432,gene-gene2532 | - |
ko00620 | Pyruvate metabolism | Metabolism | Carbohydrate metabolism | 10 | 8 | 18 | 69 | 0.102593747880073 | 0.666859361220476 | gene-gene0811,gene-gene0627,gene-gene0626,gene-gene0625,gene-gene7042,gene-gene0243,gene-gene0624,gene-gene7146,gene-gene1474,gene-gene5332 | gene-gene1553,gene-gene7372,gene-gene1269,gene-gene5715,gene-gene1601,gene-gene1551,gene-gene5226,gene-gene3627 |
ko00670 | One carbon pool by folate | Metabolism | Metabolism of cofactors and vitamins | 4 | 1 | 5 | 14 | 0.116238576195836 | 0.679995670745643 | gene-gene7053,gene-gene7051,gene-gene2337,gene-gene0530 | gene-gene1906 |
ko00480 | Glutathione metabolism | Metabolism | Metabolism of other amino acids | 3 | 2 | 5 | 14 | 0.116238576195836 | 0.679995670745643 | gene-gene2532,gene-gene1693,gene-gene5302 | gene-gene6037,gene-gene7398 |
ko00970 | Aminoacyl-tRNA biosynthesis | Genetic Information Processing | Translation | 8 | 1 | 9 | 31 | 0.128637011198327 | 0.716691919533539 | gene-gene4802,gene-gene5966,gene-gene5377,gene-gene7431,gene-gene1659,gene-gene3379,gene-gene1510,gene-gene0908 | gene-gene1906 |
ko00860 | Porphyrin metabolism | Metabolism | Metabolism of cofactors and vitamins | 8 | 4 | 12 | 45 | 0.14494684744396 | 0.737769438352132 | gene-gene3649,gene-gene6129,gene-gene5314,gene-gene6910,gene-gene5345,gene-gene5858,gene-gene5334,gene-gene6906 | gene-gene3344,gene-gene6199,gene-gene6251,gene-gene6233 |
ko00261 | Monobactam biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 3 | 1 | 4 | 11 | 0.147293450845972 | 0.737769438352132 | gene-gene5470,gene-gene5508,gene-gene0489 | gene-gene5098 |
ko00640 | Propanoate metabolism | Metabolism | Carbohydrate metabolism | 6 | 6 | 12 | 46 | 0.163768034503071 | 0.737769438352132 | gene-gene0981,gene-gene6400,gene-gene2510,gene-gene0624,gene-gene6399,gene-gene3318 | gene-gene5354,gene-gene6069,gene-gene5226,gene-gene3083,gene-gene3485,gene-gene3627 |
ko03450 | Non-homologous end-joining | Genetic Information Processing | Replication and repair | 0 | 2 | 2 | 4 | 0.171386213393591 | 0.737769438352132 | - | gene-gene7346,gene-gene2040 |
ko03070 | Bacterial secretion system | Environmental Information Processing | Membrane transport | 4 | 1 | 5 | 16 | 0.182961760032009 | 0.737769438352132 | gene-gene7481,gene-gene0754,gene-gene2912,gene-gene6954 | gene-gene5037 |
ko00405 | Phenazine biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 0 | 1 | 1 | 0.193954659949622 | 0.737769438352132 | gene-gene0254 | - |
ko00624 | Polycyclic aromatic hydrocarbon degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 1 | 0.193954659949622 | 0.737769438352132 | - | gene-gene6054 |
ko00121 | Secondary bile acid biosynthesis | Metabolism | Lipid metabolism | 0 | 1 | 1 | 1 | 0.193954659949622 | 0.737769438352132 | - | gene-gene2461 |
ko01051 | Biosynthesis of ansamycins | Metabolism | Metabolism of terpenoids and polyketides | 1 | 0 | 1 | 1 | 0.193954659949622 | 0.737769438352132 | gene-gene6100 | - |
ko00930 | Caprolactam degradation | Metabolism | Xenobiotics biodegradation and metabolism | 4 | 3 | 7 | 25 | 0.195477372554838 | 0.737769438352132 | gene-gene4285,gene-gene0981,gene-gene1000,gene-gene2510 | gene-gene7451,gene-gene3485,gene-gene5026 |
ko00270 | Cysteine and methionine metabolism | Metabolism | Amino acid metabolism | 9 | 1 | 10 | 39 | 0.209266673645325 | 0.765131275515721 | gene-gene6640,gene-gene0528,gene-gene3968,gene-gene0812,gene-gene3957,gene-gene6639,gene-gene0864,gene-gene6638,gene-gene4424 | gene-gene7366 |
ko00740 | Riboflavin metabolism | Metabolism | Metabolism of cofactors and vitamins | 3 | 1 | 4 | 13 | 0.233690739818053 | 0.801503502409536 | gene-gene5452,gene-gene4302,gene-gene5076 | gene-gene2150 |
ko00450 | Selenocompound metabolism | Metabolism | Metabolism of other amino acids | 3 | 1 | 4 | 13 | 0.233690739818053 | 0.801503502409536 | gene-gene3968,gene-gene0812,gene-gene0489 | gene-gene5098 |
ko00900 | Terpenoid backbone biosynthesis | Metabolism | Metabolism of terpenoids and polyketides | 3 | 5 | 8 | 31 | 0.239993343455539 | 0.801503502409536 | gene-gene5118,gene-gene4016,gene-gene1474 | gene-gene7372,gene-gene6664,gene-gene3409,gene-gene7785,gene-gene3410 |
ko05132 | Salmonella infection | Human Diseases | Infectious disease: bacterial | 2 | 0 | 2 | 5 | 0.250244148268803 | 0.801503502409536 | gene-gene6049,gene-gene5285 | - |
ko00562 | Inositol phosphate metabolism | Metabolism | Carbohydrate metabolism | 0 | 5 | 5 | 18 | 0.260317376850961 | 0.801503502409536 | - | gene-gene5354,gene-gene7381,gene-gene7383,gene-gene7380,gene-gene7387 |
ko00571 | Lipoarabinomannan (LAM) biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 1 | 4 | 5 | 18 | 0.260317376850961 | 0.801503502409536 | gene-gene0434 | gene-gene5025,gene-gene4081,gene-gene0018,gene-gene5016 |
ko03060 | Protein export | Genetic Information Processing | Folding, sorting and degradation | 4 | 1 | 5 | 19 | 0.301531813830555 | 0.904595441491664 | gene-gene0754,gene-gene6954,gene-gene7481,gene-gene2912 | gene-gene5037 |
ko00720 | Carbon fixation pathways in prokaryotes | Metabolism | Energy metabolism | 10 | 2 | 12 | 53 | 0.323399623336758 | 0.945943898260016 | gene-gene1639,gene-gene1693,gene-gene7042,gene-gene6399,gene-gene1474,gene-gene1640,gene-gene0811,gene-gene7053,gene-gene7051,gene-gene6400 | gene-gene7372,gene-gene5715 |
ko00232 | Caffeine metabolism | Metabolism | Biosynthesis of other secondary metabolites | 0 | 1 | 1 | 2 | 0.350389420337471 | 0.976839492720106 | - | gene-gene1135 |
ko00230 | Purine metabolism | Metabolism | Nucleotide metabolism | 9 | 7 | 16 | 75 | 0.378118195933081 | 0.976839492720106 | gene-gene3864,gene-gene6666,gene-gene4805,gene-gene1095,gene-gene1577,gene-gene7685,gene-gene0489,gene-gene1576,gene-gene4730 | gene-gene5098,gene-gene1135,gene-gene1136,gene-gene3771,gene-gene1137,gene-gene3884,gene-gene5986 |
ko00791 | Atrazine degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 2 | 2 | 7 | 0.406726706552383 | 0.976839492720106 | - | gene-gene3659,gene-gene2039 |
ko00920 | Sulfur metabolism | Metabolism | Energy metabolism | 4 | 3 | 7 | 32 | 0.430016687141602 | 0.976839492720106 | gene-gene5076,gene-gene4936,gene-gene0489,gene-gene3968 | gene-gene5098,gene-gene4681,gene-gene5102 |
ko00650 | Butanoate metabolism | Metabolism | Carbohydrate metabolism | 10 | 4 | 14 | 68 | 0.449631209837258 | 0.976839492720106 | gene-gene0981,gene-gene0901,gene-gene1639,gene-gene2510,gene-gene7065,gene-gene4340,gene-gene1474,gene-gene2509,gene-gene1640,gene-gene2351 | gene-gene7372,gene-gene3130,gene-gene3631,gene-gene3485 |
ko00071 | Fatty acid degradation | Metabolism | Lipid metabolism | 9 | 5 | 14 | 68 | 0.449631209837258 | 0.976839492720106 | gene-gene5618,gene-gene5203,gene-gene0981,gene-gene4285,gene-gene3404,gene-gene6984,gene-gene1474,gene-gene3316,gene-gene2510 | gene-gene1601,gene-gene4735,gene-gene7372,gene-gene6430,gene-gene3485 |
ko00903 | Limonene and pinene degradation | Metabolism | Metabolism of terpenoids and polyketides | 2 | 4 | 6 | 28 | 0.467393183771077 | 0.976839492720106 | gene-gene2510,gene-gene0981 | gene-gene7451,gene-gene3485,gene-gene5026,gene-gene1601 |
ko00524 | Neomycin, kanamycin and gentamicin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 0 | 1 | 1 | 3 | 0.476543303399299 | 0.976839492720106 | - | gene-gene2311 |
ko00785 | Lipoic acid metabolism | Metabolism | Metabolism of cofactors and vitamins | 1 | 0 | 1 | 3 | 0.476543303399299 | 0.976839492720106 | gene-gene0604 | - |
ko00430 | Taurine and hypotaurine metabolism | Metabolism | Metabolism of other amino acids | 0 | 2 | 2 | 8 | 0.479139606596572 | 0.976839492720106 | - | gene-gene5312,gene-gene6037 |
ko02024 | Quorum sensing | Cellular Processes | Cellular community - prokaryotes | 8 | 4 | 12 | 59 | 0.479645625773645 | 0.976839492720106 | gene-gene0193,gene-gene0254,gene-gene0191,gene-gene6984,gene-gene0754,gene-gene7481,gene-gene5203,gene-gene2912 | gene-gene2100,gene-gene4417,gene-gene5037,gene-gene2150 |
ko00310 | Lysine degradation | Metabolism | Amino acid metabolism | 6 | 3 | 9 | 45 | 0.519842766977349 | 0.976839492720106 | gene-gene0981,gene-gene2509,gene-gene1474,gene-gene0624,gene-gene7065,gene-gene2510 | gene-gene1601,gene-gene7372,gene-gene3485 |
ko00983 | Drug metabolism - other enzymes | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 0 | 3 | 14 | 0.529649187288163 | 0.976839492720106 | gene-gene7685,gene-gene6666,gene-gene4805 | - |
ko00333 | Prodigiosin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 0 | 3 | 3 | 14 | 0.529649187288163 | 0.976839492720106 | - | gene-gene7337,gene-gene5229,gene-gene3513 |
ko00061 | Fatty acid biosynthesis | Metabolism | Lipid metabolism | 2 | 8 | 10 | 51 | 0.542366502131888 | 0.976839492720106 | gene-gene5203,gene-gene6984 | gene-gene7591,gene-gene5229,gene-gene6249,gene-gene7337,gene-gene3627,gene-gene3513,gene-gene1258,gene-gene5226 |
ko02060 | Phosphotransferase system (PTS) | Environmental Information Processing | Membrane transport | 0 | 2 | 2 | 9 | 0.545869468915774 | 0.976839492720106 | - | gene-gene3954,gene-gene3010 |
ko00350 | Tyrosine metabolism | Metabolism | Amino acid metabolism | 2 | 2 | 4 | 20 | 0.562758680523187 | 0.976839492720106 | gene-gene7065,gene-gene2509 | gene-gene2661,gene-gene6254 |
ko00300 | Lysine biosynthesis | Metabolism | Amino acid metabolism | 4 | 0 | 4 | 20 | 0.562758680523187 | 0.976839492720106 | gene-gene5508,gene-gene1760,gene-gene4110,gene-gene5470 | - |
ko00380 | Tryptophan metabolism | Metabolism | Amino acid metabolism | 5 | 5 | 10 | 52 | 0.569560638721482 | 0.976839492720106 | gene-gene1474,gene-gene1787,gene-gene0624,gene-gene2510,gene-gene0981 | gene-gene3485,gene-gene6353,gene-gene1601,gene-gene7372,gene-gene6254 |
ko00500 | Starch and sucrose metabolism | Metabolism | Carbohydrate metabolism | 4 | 2 | 6 | 31 | 0.575515110260293 | 0.976839492720106 | gene-gene6470,gene-gene1095,gene-gene0970,gene-gene0328 | gene-gene6241,gene-gene2311 |
ko00626 | Naphthalene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 4 | 0.578262333401202 | 0.976839492720106 | - | gene-gene6054 |
ko00364 | Fluorobenzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 4 | 0.578262333401202 | 0.976839492720106 | - | gene-gene2004 |
ko03020 | RNA polymerase | Genetic Information Processing | Transcription | 1 | 0 | 1 | 4 | 0.578262333401202 | 0.976839492720106 | gene-gene6013 | - |
ko00053 | Ascorbate and aldarate metabolism | Metabolism | Carbohydrate metabolism | 0 | 1 | 1 | 4 | 0.578262333401202 | 0.976839492720106 | - | gene-gene1601 |
ko00623 | Toluene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 4 | 0.578262333401202 | 0.976839492720106 | - | gene-gene2004 |
ko00052 | Galactose metabolism | Metabolism | Carbohydrate metabolism | 1 | 2 | 3 | 15 | 0.579832248213343 | 0.976839492720106 | gene-gene1095 | gene-gene2311,gene-gene7598 |
ko00220 | Arginine biosynthesis | Metabolism | Amino acid metabolism | 2 | 3 | 5 | 26 | 0.588139833386652 | 0.976839492720106 | gene-gene0068,gene-gene6983 | gene-gene3802,gene-gene5839,gene-gene3659 |
ko00051 | Fructose and mannose metabolism | Metabolism | Carbohydrate metabolism | 2 | 3 | 5 | 26 | 0.588139833386652 | 0.976839492720106 | gene-gene4738,gene-gene3271 | gene-gene0341,gene-gene7598,gene-gene4578 |
ko01502 | Vancomycin resistance | Human Diseases | Drug resistance: antimicrobial | 2 | 0 | 2 | 10 | 0.606392270735842 | 0.976839492720106 | gene-gene1016,gene-gene1748 | - |
ko00572 | Arabinogalactan biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 0 | 6 | 6 | 32 | 0.609091669441529 | 0.976839492720106 | - | gene-gene2734,gene-gene5012,gene-gene0395,gene-gene5024,gene-gene2736,gene-gene6321 |
ko00130 | Ubiquinone and other terpenoid-quinone biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 2 | 1 | 3 | 16 | 0.626508458238133 | 0.976839492720106 | gene-gene3037,gene-gene7116 | gene-gene2220 |
ko00564 | Glycerophospholipid metabolism | Metabolism | Lipid metabolism | 3 | 1 | 4 | 22 | 0.643396268209453 | 0.976839492720106 | gene-gene1407,gene-gene5807,gene-gene5808 | gene-gene4796 |
ko00984 | Steroid degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 4 | 7 | 39 | 0.656189875053404 | 0.976839492720106 | gene-gene2123,gene-gene3497,gene-gene6468 | gene-gene4857,gene-gene1390,gene-gene6223,gene-gene7244 |
ko00680 | Methane metabolism | Metabolism | Energy metabolism | 3 | 2 | 5 | 28 | 0.658244583254864 | 0.976839492720106 | gene-gene0850,gene-gene0864,gene-gene3271 | gene-gene7598,gene-gene5715 |
ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | Metabolism | Amino acid metabolism | 2 | 3 | 5 | 28 | 0.658244583254864 | 0.976839492720106 | gene-gene0254,gene-gene0262 | gene-gene1653,gene-gene2100,gene-gene2656 |
ko01503 | Cationic antimicrobial peptide (CAMP) resistance | Human Diseases | Drug resistance: antimicrobial | 0 | 1 | 1 | 5 | 0.660266879684301 | 0.976839492720106 | - | gene-gene5084 |
ko00660 | C5-Branched dibasic acid metabolism | Metabolism | Carbohydrate metabolism | 1 | 1 | 2 | 11 | 0.660599427414568 | 0.976839492720106 | gene-gene0901 | gene-gene3130 |
ko01059 | Biosynthesis of enediyne antibiotics | Metabolism | Metabolism of terpenoids and polyketides | 1 | 1 | 2 | 11 | 0.660599427414568 | 0.976839492720106 | gene-gene7086 | gene-gene3329 |
ko05152 | Tuberculosis | Human Diseases | Infectious disease: bacterial | 0 | 2 | 2 | 11 | 0.660599427414568 | 0.976839492720106 | - | gene-gene5405,gene-gene3302 |
ko00410 | beta-Alanine metabolism | Metabolism | Metabolism of other amino acids | 2 | 3 | 5 | 29 | 0.690282538536798 | 0.976839492720106 | gene-gene0981,gene-gene2510 | gene-gene5354,gene-gene1601,gene-gene3485 |
ko00627 | Aminobenzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 2 | 5 | 29 | 0.690282538536798 | 0.976839492720106 | gene-gene2510,gene-gene1787,gene-gene0981 | gene-gene6353,gene-gene3485 |
ko00520 | Amino sugar and nucleotide sugar metabolism | Metabolism | Carbohydrate metabolism | 2 | 4 | 6 | 35 | 0.700388258535676 | 0.976839492720106 | gene-gene1095,gene-gene1761 | gene-gene2311,gene-gene3747,gene-gene2894,gene-gene4578 |
ko00643 | Styrene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 1 | 2 | 12 | 0.708657148246861 | 0.976839492720106 | gene-gene1787 | gene-gene6353 |
ko02025 | Biofilm formation | Cellular Processes | Cellular community - prokaryotes | 1 | 1 | 2 | 12 | 0.708657148246861 | 0.976839492720106 | gene-gene0254 | gene-gene3884 |
ko00998 | Biosynthesis of various secondary metabolites - part 2 | Metabolism | Biosynthesis of other secondary metabolites | 1 | 0 | 1 | 6 | 0.726367827920078 | 0.976839492720106 | gene-gene0896 | - |
ko00401 | Novobiocin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 0 | 1 | 1 | 6 | 0.726367827920078 | 0.976839492720106 | - | gene-gene2656 |
ko00621 | Dioxin degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 6 | 0.726367827920078 | 0.976839492720106 | - | gene-gene6054 |
ko00360 | Phenylalanine metabolism | Metabolism | Amino acid metabolism | 3 | 5 | 8 | 48 | 0.742178465718416 | 0.98676000555744 | gene-gene2351,gene-gene2510,gene-gene0981 | gene-gene1653,gene-gene6353,gene-gene3485,gene-gene4735,gene-gene6254 |
ko03420 | Nucleotide excision repair | Genetic Information Processing | Replication and repair | 1 | 1 | 2 | 13 | 0.750904475512906 | 0.987144085786629 | gene-gene0938 | gene-gene4603 |
ko00361 | Chlorocyclohexane and chlorobenzene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 7 | 0.779641348148028 | 0.989538483511382 | - | gene-gene2004 |
ko00523 | Polyketide sugar unit biosynthesis | Metabolism | Metabolism of terpenoids and polyketides | 0 | 1 | 1 | 7 | 0.779641348148028 | 0.989538483511382 | - | gene-gene0019 |
ko00470 | D-Amino acid metabolism | Metabolism | Metabolism of other amino acids | 1 | 1 | 2 | 14 | 0.787780356883696 | 0.989538483511382 | gene-gene1748 | gene-gene7366 |
ko00521 | Streptomycin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 1 | 2 | 14 | 0.787780356883696 | 0.989538483511382 | gene-gene1095 | gene-gene2311 |
ko00260 | Glycine, serine and threonine metabolism | Metabolism | Amino acid metabolism | 6 | 1 | 7 | 45 | 0.800074113246855 | 0.989538483511382 | gene-gene0530,gene-gene3957,gene-gene0624,gene-gene0864,gene-gene3139,gene-gene4424 | gene-gene1130 |
ko03430 | Mismatch repair | Genetic Information Processing | Replication and repair | 2 | 1 | 3 | 21 | 0.805093347416235 | 0.989538483511382 | gene-gene4034,gene-gene0938 | gene-gene4603 |
ko00910 | Nitrogen metabolism | Metabolism | Energy metabolism | 2 | 2 | 4 | 28 | 0.822649880096366 | 0.989538483511382 | gene-gene1787,gene-gene6983 | gene-gene1955,gene-gene7310 |
ko00550 | Peptidoglycan biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 2 | 1 | 3 | 23 | 0.853238905452689 | 0.989538483511382 | gene-gene5118,gene-gene1016 | gene-gene6718 |
ko00625 | Chloroalkane and chloroalkene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 0 | 1 | 1 | 9 | 0.857157755801401 | 0.989538483511382 | - | gene-gene1601 |
ko00790 | Folate biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 1 | 2 | 3 | 25 | 0.890691766017488 | 0.989538483511382 | gene-gene4948 | gene-gene1653,gene-gene2150 |
ko00281 | Geraniol degradation | Metabolism | Metabolism of terpenoids and polyketides | 2 | 1 | 3 | 26 | 0.906011878905981 | 0.989538483511382 | gene-gene0981,gene-gene2510 | gene-gene3485 |
ko03410 | Base excision repair | Genetic Information Processing | Replication and repair | 2 | 0 | 2 | 19 | 0.908687019188303 | 0.989538483511382 | gene-gene0938,gene-gene1670 | - |
ko00730 | Thiamine metabolism | Metabolism | Metabolism of cofactors and vitamins | 1 | 0 | 1 | 12 | 0.925535935775482 | 0.989538483511382 | gene-gene3307 | - |
ko04112 | Cell cycle - Caulobacter | Cellular Processes | Cell growth and death | 1 | 0 | 1 | 12 | 0.925535935775482 | 0.989538483511382 | gene-gene1016 | - |
ko00040 | Pentose and glucuronate interconversions | Metabolism | Carbohydrate metabolism | 1 | 0 | 1 | 12 | 0.925535935775482 | 0.989538483511382 | gene-gene7209 | - |
ko00362 | Benzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 4 | 3 | 7 | 56 | 0.939950252225448 | 0.989538483511382 | gene-gene1474,gene-gene2351,gene-gene2510,gene-gene0981 | gene-gene0401,gene-gene3485,gene-gene7372 |
ko02010 | ABC transporters | Environmental Information Processing | Membrane transport | 12 | 6 | 18 | 125 | 0.948068374868287 | 0.989538483511382 | gene-gene1430,gene-gene1427,gene-gene0191,gene-gene5906,gene-gene1426,gene-gene1425,gene-gene4936,gene-gene0193,gene-gene1424,gene-gene1429,gene-gene7637,gene-gene7182 | gene-gene7297,gene-gene2388,gene-gene7302,gene-gene7544,gene-gene7303,gene-gene7300 |
ko03018 | RNA degradation | Genetic Information Processing | Folding, sorting and degradation | 0 | 1 | 1 | 15 | 0.96123544427122 | 0.989538483511382 | - | gene-gene5405 |
ko00760 | Nicotinate and nicotinamide metabolism | Metabolism | Metabolism of cofactors and vitamins | 2 | 0 | 2 | 24 | 0.962684280818594 | 0.989538483511382 | gene-gene7065,gene-gene2509 | - |
ko03010 | Ribosome | Genetic Information Processing | Translation | 4 | 3 | 7 | 60 | 0.963306768758674 | 0.989538483511382 | gene-gene1504,gene-gene4922,gene-gene4808,gene-gene3711 | gene-gene1925,gene-gene1885,gene-gene2186 |
ko00240 | Pyrimidine metabolism | Metabolism | Nucleotide metabolism | 2 | 1 | 3 | 32 | 0.963636439843946 | 0.989538483511382 | gene-gene0709,gene-gene4805 | gene-gene5033 |
ko00330 | Arginine and proline metabolism | Metabolism | Amino acid metabolism | 0 | 3 | 3 | 32 | 0.963636439843946 | 0.989538483511382 | - | gene-gene6353,gene-gene4100,gene-gene1601 |
ko03440 | Homologous recombination | Genetic Information Processing | Replication and repair | 0 | 2 | 2 | 25 | 0.968944499496951 | 0.989538483511382 | - | gene-gene7509,gene-gene7508 |
ko00780 | Biotin metabolism | Metabolism | Metabolism of cofactors and vitamins | 0 | 2 | 2 | 25 | 0.968944499496951 | 0.989538483511382 | - | gene-gene3513,gene-gene7337 |
ko02020 | Two-component system | Environmental Information Processing | Signal transduction | 3 | 7 | 10 | 81 | 0.969005336532655 | 0.989538483511382 | gene-gene6129,gene-gene1474,gene-gene6983 | gene-gene3630,gene-gene5300,gene-gene5299,gene-gene7372,gene-gene0788,gene-gene7310,gene-gene2054 |
ko00190 | Oxidative phosphorylation | Metabolism | Energy metabolism | 6 | 1 | 7 | 65 | 0.980854001744175 | 0.989538483511382 | gene-gene0459,gene-gene0992,gene-gene0511,gene-gene1639,gene-gene6129,gene-gene1640 | gene-gene3119 |
ko00541 | O-Antigen nucleotide sugar biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 0 | 1 | 1 | 19 | 0.983801380125898 | 0.989538483511382 | - | gene-gene4578 |
ko03030 | DNA replication | Genetic Information Processing | Replication and repair | 1 | 0 | 1 | 21 | 0.989538483511382 | 0.989538483511382 | gene-gene0938 | - |