1. CK-VS-TSG
PathwayID | Pathway | Level1 | Level2 | list_number | total_number | Pvalue | FDR | Gene |
ko00020 | Citrate cycle (TCA cycle) | Metabolism | Carbohydrate metabolism | 10 | 40 | 0.00433522695431459 | 0.257552957326876 | gene-gene0811,gene-gene7042,gene-gene0627,gene-gene0625,gene-gene0624,gene-gene1693,gene-gene5332,gene-gene0626,gene-gene1640,gene-gene1639 |
ko00970 | Aminoacyl-tRNA biosynthesis | Genetic Information Processing | Translation | 8 | 31 | 0.00862541186903765 | 0.257552957326876 | gene-gene4802,gene-gene5377,gene-gene1510,gene-gene5966,gene-gene7431,gene-gene1659,gene-gene0908,gene-gene3379 |
ko05130 | Pathogenic Escherichia coli infection | Human Diseases | Infectious disease: bacterial | 2 | 2 | 0.00984304146251264 | 0.257552957326876 | gene-gene5285,gene-gene6049 |
ko00270 | Cysteine and methionine metabolism | Metabolism | Amino acid metabolism | 9 | 39 | 0.0117069526057671 | 0.257552957326876 | gene-gene3968,gene-gene6639,gene-gene6640,gene-gene6638,gene-gene0528,gene-gene0864,gene-gene3957,gene-gene4424,gene-gene0812 |
ko00590 | Arachidonic acid metabolism | Metabolism | Lipid metabolism | 2 | 3 | 0.0275927883621256 | 0.369732234063978 | gene-gene2532,gene-gene5432 |
ko00030 | Pentose phosphate pathway | Metabolism | Carbohydrate metabolism | 6 | 25 | 0.031515929216008 | 0.369732234063978 | gene-gene6100,gene-gene4738,gene-gene3864,gene-gene3271,gene-gene5302,gene-gene1095 |
ko00720 | Carbon fixation pathways in prokaryotes | Metabolism | Energy metabolism | 10 | 53 | 0.0319465290535459 | 0.369732234063978 | gene-gene1693,gene-gene1639,gene-gene1640,gene-gene7053,gene-gene6400,gene-gene6399,gene-gene7051,gene-gene1474,gene-gene0811,gene-gene7042 |
ko00710 | Carbon fixation in photosynthetic organisms | Metabolism | Energy metabolism | 5 | 19 | 0.0336120212785434 | 0.369732234063978 | gene-gene4738,gene-gene6049,gene-gene5285,gene-gene6100,gene-gene3271 |
ko00630 | Glyoxylate and dicarboxylate metabolism | Metabolism | Carbohydrate metabolism | 11 | 63 | 0.0419929874051283 | 0.375648120467238 | gene-gene1474,gene-gene2350,gene-gene0530,gene-gene3139,gene-gene6983,gene-gene7146,gene-gene6399,gene-gene0624,gene-gene6400,gene-gene2337,gene-gene3318 |
ko00670 | One carbon pool by folate | Metabolism | Metabolism of cofactors and vitamins | 4 | 14 | 0.0426872864167316 | 0.375648120467238 | gene-gene7051,gene-gene7053,gene-gene2337,gene-gene0530 |
ko00010 | Glycolysis / Gluconeogenesis | Metabolism | Carbohydrate metabolism | 9 | 49 | 0.047756398626079 | 0.382051189008632 | gene-gene0626,gene-gene0624,gene-gene5285,gene-gene6049,gene-gene0627,gene-gene0625,gene-gene0243,gene-gene3271,gene-gene1095 |
ko03070 | Bacterial secretion system | Environmental Information Processing | Membrane transport | 4 | 16 | 0.066401405133031 | 0.424934765438904 | gene-gene6954,gene-gene7481,gene-gene0754,gene-gene2912 |
ko00860 | Porphyrin metabolism | Metabolism | Metabolism of cofactors and vitamins | 8 | 45 | 0.0710698636744905 | 0.424934765438904 | gene-gene5858,gene-gene5334,gene-gene6129,gene-gene6910,gene-gene5345,gene-gene3649,gene-gene5314,gene-gene6906 |
ko00280 | Valine, leucine and isoleucine degradation | Metabolism | Amino acid metabolism | 12 | 78 | 0.0790315311272761 | 0.424934765438904 | gene-gene0981,gene-gene2510,gene-gene6399,gene-gene6400,gene-gene0624,gene-gene3404,gene-gene7644,gene-gene3316,gene-gene3318,gene-gene1474,gene-gene5618,gene-gene0528 |
ko05132 | Salmonella infection | Human Diseases | Infectious disease: bacterial | 2 | 5 | 0.080450418164833 | 0.424934765438904 | gene-gene5285,gene-gene6049 |
ko00770 | Pantothenate and CoA biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 5 | 24 | 0.0820896705961519 | 0.424934765438904 | gene-gene0901,gene-gene0903,gene-gene0528,gene-gene4018,gene-gene0899 |
ko00340 | Histidine metabolism | Metabolism | Amino acid metabolism | 5 | 24 | 0.0820896705961519 | 0.424934765438904 | gene-gene4618,gene-gene0267,gene-gene7007,gene-gene0266,gene-gene0262 |
ko00261 | Monobactam biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 3 | 11 | 0.0878173071788835 | 0.428976078936859 | gene-gene5470,gene-gene0489,gene-gene5508 |
ko01051 | Biosynthesis of ansamycins | Metabolism | Metabolism of terpenoids and polyketides | 1 | 1 | 0.0994962216624685 | 0.428976078936859 | gene-gene6100 |
ko00405 | Phenazine biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 1 | 0.0994962216624685 | 0.428976078936859 | gene-gene0254 |
ko03060 | Protein export | Genetic Information Processing | Folding, sorting and degradation | 4 | 19 | 0.112177082470318 | 0.428976078936859 | gene-gene2912,gene-gene0754,gene-gene7481,gene-gene6954 |
ko00300 | Lysine biosynthesis | Metabolism | Amino acid metabolism | 4 | 20 | 0.129890524405684 | 0.428976078936859 | gene-gene5508,gene-gene1760,gene-gene4110,gene-gene5470 |
ko00290 | Valine, leucine and isoleucine biosynthesis | Metabolism | Amino acid metabolism | 4 | 20 | 0.129890524405684 | 0.428976078936859 | gene-gene0528,gene-gene0903,gene-gene0901,gene-gene0899 |
ko00650 | Butanoate metabolism | Metabolism | Carbohydrate metabolism | 10 | 68 | 0.130498427316691 | 0.428976078936859 | gene-gene0981,gene-gene2510,gene-gene2351,gene-gene1474,gene-gene4340,gene-gene2509,gene-gene0901,gene-gene1640,gene-gene1639,gene-gene7065 |
ko00740 | Riboflavin metabolism | Metabolism | Metabolism of cofactors and vitamins | 3 | 13 | 0.1316176605829 | 0.428976078936859 | gene-gene5452,gene-gene4302,gene-gene5076 |
ko00460 | Cyanoamino acid metabolism | Metabolism | Metabolism of other amino acids | 3 | 13 | 0.1316176605829 | 0.428976078936859 | gene-gene6470,gene-gene1787,gene-gene5559 |
ko00450 | Selenocompound metabolism | Metabolism | Metabolism of other amino acids | 3 | 13 | 0.1316176605829 | 0.428976078936859 | gene-gene3968,gene-gene0489,gene-gene0812 |
ko00620 | Pyruvate metabolism | Metabolism | Carbohydrate metabolism | 10 | 69 | 0.140121035562452 | 0.440380397481992 | gene-gene0624,gene-gene7042,gene-gene0811,gene-gene0627,gene-gene7146,gene-gene0625,gene-gene0243,gene-gene0626,gene-gene1474,gene-gene5332 |
ko01040 | Biosynthesis of unsaturated fatty acids | Metabolism | Lipid metabolism | 4 | 21 | 0.148683146627029 | 0.442473648751072 | gene-gene1038,gene-gene4303,gene-gene1169,gene-gene4662 |
ko00983 | Drug metabolism - other enzymes | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 14 | 0.155871398991855 | 0.442473648751072 | gene-gene7685,gene-gene6666,gene-gene4805 |
ko00480 | Glutathione metabolism | Metabolism | Metabolism of other amino acids | 3 | 14 | 0.155871398991855 | 0.442473648751072 | gene-gene5302,gene-gene2532,gene-gene1693 |
ko00250 | Alanine, aspartate and glutamate metabolism | Metabolism | Amino acid metabolism | 6 | 41 | 0.217146017332728 | 0.584682573781396 | gene-gene6983,gene-gene0068,gene-gene7065,gene-gene0512,gene-gene5559,gene-gene2509 |
ko02024 | Quorum sensing | Cellular Processes | Cellular community - prokaryotes | 8 | 59 | 0.226811988177784 | 0.584682573781396 | gene-gene0754,gene-gene0191,gene-gene2912,gene-gene0254,gene-gene5203,gene-gene6984,gene-gene0193,gene-gene7481 |
ko00071 | Fatty acid degradation | Metabolism | Lipid metabolism | 9 | 68 | 0.228661947676137 | 0.584682573781396 | gene-gene5618,gene-gene6984,gene-gene1474,gene-gene4285,gene-gene3316,gene-gene3404,gene-gene5203,gene-gene2510,gene-gene0981 |
ko00930 | Caprolactam degradation | Metabolism | Xenobiotics biodegradation and metabolism | 4 | 25 | 0.232544205481237 | 0.584682573781396 | gene-gene4285,gene-gene1000,gene-gene2510,gene-gene0981 |
ko01502 | Vancomycin resistance | Human Diseases | Drug resistance: antimicrobial | 2 | 10 | 0.261820831281941 | 0.640006476466967 | gene-gene1016,gene-gene1748 |
ko00785 | Lipoic acid metabolism | Metabolism | Metabolism of cofactors and vitamins | 1 | 3 | 0.269927708612574 | 0.641990225889365 | gene-gene0604 |
ko00260 | Glycine, serine and threonine metabolism | Metabolism | Amino acid metabolism | 6 | 45 | 0.286627960346183 | 0.64675026949908 | gene-gene0624,gene-gene0530,gene-gene3139,gene-gene3957,gene-gene0864,gene-gene4424 |
ko00310 | Lysine degradation | Metabolism | Amino acid metabolism | 6 | 45 | 0.286627960346183 | 0.64675026949908 | gene-gene7065,gene-gene1474,gene-gene2509,gene-gene0624,gene-gene0981,gene-gene2510 |
ko00640 | Propanoate metabolism | Metabolism | Carbohydrate metabolism | 6 | 46 | 0.304750942196184 | 0.670452072831606 | gene-gene3318,gene-gene0624,gene-gene6400,gene-gene2510,gene-gene0981,gene-gene6399 |
ko00230 | Purine metabolism | Metabolism | Nucleotide metabolism | 9 | 75 | 0.326494307947907 | 0.700768270717458 | gene-gene4805,gene-gene1577,gene-gene3864,gene-gene6666,gene-gene7685,gene-gene1095,gene-gene4730,gene-gene0489,gene-gene1576 |
ko03020 | RNA polymerase | Genetic Information Processing | Transcription | 1 | 4 | 0.34270463103479 | 0.718047798358608 | gene-gene6013 |
ko00500 | Starch and sucrose metabolism | Metabolism | Carbohydrate metabolism | 4 | 31 | 0.372441369290033 | 0.753976796437279 | gene-gene1095,gene-gene0970,gene-gene6470,gene-gene0328 |
ko00564 | Glycerophospholipid metabolism | Metabolism | Lipid metabolism | 3 | 22 | 0.376988398218639 | 0.753976796437279 | gene-gene5808,gene-gene1407,gene-gene5807 |
ko00920 | Sulfur metabolism | Metabolism | Energy metabolism | 4 | 32 | 0.396097725300771 | 0.774591107254842 | gene-gene4936,gene-gene0489,gene-gene5076,gene-gene3968 |
ko00998 | Biosynthesis of various secondary metabolites - part 2 | Metabolism | Biosynthesis of other secondary metabolites | 1 | 6 | 0.46732922461118 | 0.894021125343128 | gene-gene0896 |
ko00130 | Ubiquinone and other terpenoid-quinone biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 2 | 16 | 0.483360264824435 | 0.905014963926601 | gene-gene7116,gene-gene3037 |
ko00680 | Methane metabolism | Metabolism | Energy metabolism | 3 | 28 | 0.53860103063491 | 0.915927709682859 | gene-gene3271,gene-gene0864,gene-gene0850 |
ko00627 | Aminobenzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 29 | 0.563241878947809 | 0.915927709682859 | gene-gene1787,gene-gene0981,gene-gene2510 |
ko03410 | Base excision repair | Genetic Information Processing | Replication and repair | 2 | 19 | 0.578290884334017 | 0.915927709682859 | gene-gene0938,gene-gene1670 |
ko02010 | ABC transporters | Environmental Information Processing | Membrane transport | 12 | 125 | 0.602066351664065 | 0.915927709682859 | gene-gene1427,gene-gene4936,gene-gene5906,gene-gene1425,gene-gene0191,gene-gene1424,gene-gene1430,gene-gene7182,gene-gene0193,gene-gene1429,gene-gene1426,gene-gene7637 |
ko00380 | Tryptophan metabolism | Metabolism | Amino acid metabolism | 5 | 52 | 0.603102993885742 | 0.915927709682859 | gene-gene1474,gene-gene2510,gene-gene0981,gene-gene1787,gene-gene0624 |
ko00350 | Tyrosine metabolism | Metabolism | Amino acid metabolism | 2 | 20 | 0.606989969743209 | 0.915927709682859 | gene-gene2509,gene-gene7065 |
ko00900 | Terpenoid backbone biosynthesis | Metabolism | Metabolism of terpenoids and polyketides | 3 | 31 | 0.610073280959191 | 0.915927709682859 | gene-gene4016,gene-gene1474,gene-gene5118 |
ko03430 | Mismatch repair | Genetic Information Processing | Replication and repair | 2 | 21 | 0.634193990015618 | 0.915927709682859 | gene-gene0938,gene-gene4034 |
ko00190 | Oxidative phosphorylation | Metabolism | Energy metabolism | 6 | 65 | 0.641911658560638 | 0.915927709682859 | gene-gene0459,gene-gene1640,gene-gene1639,gene-gene0511,gene-gene0992,gene-gene6129 |
ko00550 | Peptidoglycan biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 2 | 23 | 0.684175686024185 | 0.915927709682859 | gene-gene1016,gene-gene5118 |
ko00660 | C5-Branched dibasic acid metabolism | Metabolism | Carbohydrate metabolism | 1 | 11 | 0.685463381614098 | 0.915927709682859 | gene-gene0901 |
ko01059 | Biosynthesis of enediyne antibiotics | Metabolism | Metabolism of terpenoids and polyketides | 1 | 11 | 0.685463381614098 | 0.915927709682859 | gene-gene7086 |
ko00760 | Nicotinate and nicotinamide metabolism | Metabolism | Metabolism of cofactors and vitamins | 2 | 24 | 0.707011313709727 | 0.915927709682859 | gene-gene7065,gene-gene2509 |
ko00730 | Thiamine metabolism | Metabolism | Metabolism of cofactors and vitamins | 1 | 12 | 0.716976879207612 | 0.915927709682859 | gene-gene3307 |
ko04112 | Cell cycle - Caulobacter | Cellular Processes | Cell growth and death | 1 | 12 | 0.716976879207612 | 0.915927709682859 | gene-gene1016 |
ko00643 | Styrene degradation | Metabolism | Xenobiotics biodegradation and metabolism | 1 | 12 | 0.716976879207612 | 0.915927709682859 | gene-gene1787 |
ko00040 | Pentose and glucuronate interconversions | Metabolism | Carbohydrate metabolism | 1 | 12 | 0.716976879207612 | 0.915927709682859 | gene-gene7209 |
ko02025 | Biofilm formation | Cellular Processes | Cellular community - prokaryotes | 1 | 12 | 0.716976879207612 | 0.915927709682859 | gene-gene0254 |
ko03420 | Nucleotide excision repair | Genetic Information Processing | Replication and repair | 1 | 13 | 0.74535102456624 | 0.915927709682859 | gene-gene0938 |
ko00051 | Fructose and mannose metabolism | Metabolism | Carbohydrate metabolism | 2 | 26 | 0.748578324127924 | 0.915927709682859 | gene-gene4738,gene-gene3271 |
ko00281 | Geraniol degradation | Metabolism | Metabolism of terpenoids and polyketides | 2 | 26 | 0.748578324127924 | 0.915927709682859 | gene-gene2510,gene-gene0981 |
ko00220 | Arginine biosynthesis | Metabolism | Amino acid metabolism | 2 | 26 | 0.748578324127924 | 0.915927709682859 | gene-gene0068,gene-gene6983 |
ko00984 | Steroid degradation | Metabolism | Xenobiotics biodegradation and metabolism | 3 | 39 | 0.762576998888698 | 0.915927709682859 | gene-gene6468,gene-gene2123,gene-gene3497 |
ko00521 | Streptomycin biosynthesis | Metabolism | Biosynthesis of other secondary metabolites | 1 | 14 | 0.770896763054198 | 0.915927709682859 | gene-gene1095 |
ko00470 | D-Amino acid metabolism | Metabolism | Metabolism of other amino acids | 1 | 14 | 0.770896763054198 | 0.915927709682859 | gene-gene1748 |
ko00903 | Limonene and pinene degradation | Metabolism | Metabolism of terpenoids and polyketides | 2 | 28 | 0.785009513763902 | 0.915927709682859 | gene-gene2510,gene-gene0981 |
ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | Metabolism | Amino acid metabolism | 2 | 28 | 0.785009513763902 | 0.915927709682859 | gene-gene0262,gene-gene0254 |
ko00910 | Nitrogen metabolism | Metabolism | Energy metabolism | 2 | 28 | 0.785009513763902 | 0.915927709682859 | gene-gene6983,gene-gene1787 |
ko00052 | Galactose metabolism | Metabolism | Carbohydrate metabolism | 1 | 15 | 0.79389441962182 | 0.915927709682859 | gene-gene1095 |
ko00410 | beta-Alanine metabolism | Metabolism | Metabolism of other amino acids | 2 | 29 | 0.801436745972501 | 0.915927709682859 | gene-gene2510,gene-gene0981 |
ko00362 | Benzoate degradation | Metabolism | Xenobiotics biodegradation and metabolism | 4 | 56 | 0.825793580639812 | 0.93149410009651 | gene-gene2510,gene-gene0981,gene-gene1474,gene-gene2351 |
ko00240 | Pyrimidine metabolism | Metabolism | Nucleotide metabolism | 2 | 32 | 0.844254485905249 | 0.93149410009651 | gene-gene0709,gene-gene4805 |
ko00571 | Lipoarabinomannan (LAM) biosynthesis | Metabolism | Glycan biosynthesis and metabolism | 1 | 18 | 0.850003780789399 | 0.93149410009651 | gene-gene0434 |
ko03010 | Ribosome | Genetic Information Processing | Translation | 4 | 60 | 0.864851407735868 | 0.93149410009651 | gene-gene3711,gene-gene4808,gene-gene4922,gene-gene1504 |
ko00360 | Phenylalanine metabolism | Metabolism | Amino acid metabolism | 3 | 48 | 0.872703101022504 | 0.93149410009651 | gene-gene0981,gene-gene2510,gene-gene2351 |
ko00520 | Amino sugar and nucleotide sugar metabolism | Metabolism | Carbohydrate metabolism | 2 | 35 | 0.878568298954662 | 0.93149410009651 | gene-gene1095,gene-gene1761 |
ko03030 | DNA replication | Genetic Information Processing | Replication and repair | 1 | 21 | 0.89090810615948 | 0.933332301690884 | gene-gene0938 |
ko00561 | Glycerolipid metabolism | Metabolism | Lipid metabolism | 3 | 55 | 0.924463824175479 | 0.950317129942021 | gene-gene5778,gene-gene4309,gene-gene3139 |
ko00790 | Folate biosynthesis | Metabolism | Metabolism of cofactors and vitamins | 1 | 25 | 0.92871901335243 | 0.950317129942021 | gene-gene4948 |
ko00061 | Fatty acid biosynthesis | Metabolism | Lipid metabolism | 2 | 51 | 0.970190672790734 | 0.981342289719363 | gene-gene5203,gene-gene6984 |
ko02020 | Two-component system | Environmental Information Processing | Signal transduction | 3 | 81 | 0.991117053549431 | 0.991117053549431 | gene-gene1474,gene-gene6983,gene-gene6129 |