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DOI: 10.4121/13317587

van Vliet, Daan M. (2020): Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T). Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/13317587.v1

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Categories

• Microbiology
• Genetics

Keywords

fucoidan polysaccharide utilization loci RNA-Seq sulfatases transcriptomics

Time coverage

2019-2020

Licence

CC BY 4.0

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by Daan M. van Vliet

We examined the gene expression of the marine anaerobe Pontiella desulfatans F1(T) during growth on fucoidan from Fucus vesiculosus and on its monomer L-fucose with transcriptomics to obtain insight into the pathways involved. We observed upregulation of fucoidan-specific polysaccharide utilization loci (PULs), and found evidence for a novel L-fucose degradation pathway.

History

• 2020-12-15 first online, published, posted

Publisher

4TU.ResearchData

Format

pdf xlsx

Funding

• SIAM gravitation grant 024.002.002

Organizations

Laboratory of Microbiology, Wageningen University & Research