Makrodimitris, Stavros (2020): Protein function prediction using pre-trained ELMO embeddings. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/uuid:b88d84e1-7408-40d9-a8fc-d734f852dd7a

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Categories

• Artificial Intelligence and Image Processing
• Biochemistry and Cell Biology

Keywords

Amino acid sequence Bioinformatics CAFA Computational biology Feature learning techniques Protein function prediction

Licence

CC0

Interoperability

• RO-Crate Metadata

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by Stavros Makrodimitris

This dataset includes the data for training the protein function prediction models at github.com/stamakro/GCN-for-Structure-and-Function. For each protein, a pickle file is provided, containing its sequence, ELMo embedding and labels. It also includes the weights of the trained models that can be applied directly. README file at github.com/stamakro/GCN-for-Structure-and-Function

History

• 2020-02-04 first online, published, posted

Publisher

4TU.Centre for Research Data

Format

media types: application/octet-stream, application/x-tar, application/zip, text/plain

Organizations

TU Delft, Faculty of Electrical Engineering, Mathematics, and Computer Science, Department of Computer Science and Engineering (Mediamatica)