MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

DOI:10.4121/19074791.v1
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DOI: 10.4121/19074791
Datacite citation style:
Koen Verhagen; Eerden, Siem; Sikkema, Baukje; Wahl, Aljoscha (2022): MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae". Version 1. 4TU.ResearchData. software. https://doi.org/10.4121/19074791.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite

Software

MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"Contains scripts for:- Converting proteome datasets to the model proteome allocation format.- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.- Determining the overcapacity present in proteome provided as input under user-specified conditions.

History

  • 2022-01-28 first online, published, posted

Publisher

4TU.ResearchData

Format

MATLAB scripts (.m), MATLAB data (.mat) and Excel (.xlsx) files

Funding

  • NWO Building Blocks of Life 737.016.001

Organizations

Delft University of Technology, Faculty of Applied Sciences, Department of Biotechnology

DATA

Files (1)