The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
doi: 10.4121/14061122

Eef Jonkheer; Sandra Smit; Theo van der Lee; Balázs Brankovics; Jan van der Wolf et. al. (2021): Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool". Version 2. 4TU.ResearchData. dataset. https://doi.org/10.4121/14061122.v2

Dataset

x choose version: version 1 - 2021-02-23

• Genetics
• Evolutionary Biology

Comparative genomics, Gene repertoire, Pangenome, Pectobacterium, Pectobacterium brasiliense, Phylogeny, Plant pathogen, soft rot Pectobacteriaceae, Virulence

CC BY-SA 4.0

RefWorks, BibTeX, Reference Manager, Endnote, DataCite, NLM, DC, CFF

by Eef Jonkheer , Sandra Smit , Theo van der Lee , Balázs Brankovics , Jan van der Wolf , Robert Vreeburg

The dataset contains 197 genome (.fna) and 197 annotation (.gff) files that are placed in the compressed 'pectobacterium_genomes.zip' and 'pectobacterium_annotations.zip' directories. An overview of the data, including strain names, NCBI accessions, and Biosample identifiers is added as 'genome_annotation_data.xlsx'

• 2021-02-23 first online

• 2021-02-25 published, posted

4TU.ResearchData

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

• This research was funded by the Dutch Ministry of Economic Affairs in the Topsector Program “Horticulture and Starting Materials” under the theme “Plant Health” (project number: TU 16022) and its partners (NAK, Naktuinbouw and BKD).

Bioinformatics Group, Wageningen University & Research
Wageningen Plant Research, Wageningen University & Research
Nederlandse Algemene Keuringsdienst voor zaaizaad en pootgoed van landbouwgewassen