Nijkamp, J.F. (2013): MaryGold 7 ecoli simulated metagenome assembly (AMOS bank). Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/uuid:861d8a8e-bea7-4b11-8bb2-8d8e7cc772ab

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• Genetics
• Computer Software

Keywords

Computer Software Genetics

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4TU General Terms of Use

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by J.F. Nijkamp

A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default settings from the genomes of seven E. coli strains, to illustrate the effect on metagenome assembly of multiple closely related genomes. The strains were ABU83972 gi|386637352|ref|NC_017631.1|; BL21_gold gi|253771435|ref|NC_012947.1|; CFT073 gi|26245917|ref|NC_004431.1|; K12_DH10B gi|170079663|ref|NC_010473.1|; O104_H4 gi|410480139|ref|NC_018650.1|; O26_H11 gi|260853213|ref|NC_013361.1| SE11 gi|209917191|ref|NC_011415.1|

History

• 2013-11-26 first online, published, posted

Publisher

Delft University of Technology

Format

media types: application/x-tar

References

• https://doi.org/10.1093/bioinformatics/btt502

Organizations

TU Delft, Faculty of Electrical Engineering, Mathematics and Computer Science, Department of Intelligent Systems